Plot a TS diagram for an argoFloats object that was created with
readProfiles(). This function is called by plot,argoFloats-method(),
but may also be called directly.
plotArgoTS(
x,
xlim = NULL,
ylim = NULL,
type = "p",
cex = 1,
col = NULL,
pch = 1,
bg = "white",
eos = "gsw",
TSControl = NULL,
debug = 0,
...
)an argoFloats object that was created with readProfiles().
optional limits of salinity and temperature axes; if not provided, the plot region will be large enough to show all the data.
character value indicating the of plot. This has the same meaning
as for general R plots: "p" for points, "l" for lines, etc. Note that
lines are joined up between cycles, unless the TSControl parameter indicates
otherwise.
values that have the same meaning as for general R plots
if TSControl$groupByCycle is FALSE, except that if col is not
provided by the user and if type is "l", then the points
are colour-coded to indicate the value of data-quality flags.
Black symbols indicate good data, i.e. data for which the
flags for pressure, salinity and temperature are all in the set
(1, 2, 5, 8). Red is used for bad data, with any of these three
variables being flagged in the set (3, 4, 6, 7). And, finally
gray is used if data that have not been assessed for quality,
with the flags for all three of these variables being 0.
(For more on flags, see Reference Table 2 in Section 3.2 of
reference 1.)
character value, either "gsw" (the default) for the Gibbs-Seawater
(TEOS-10) equation of state or "unesco" for the 1980s-era UNESCO equation of
state.
an optional list that may have a logical element named groupByCycle,
meaning to group the data by cycle. If TSControl is not provided, it is set
to list(groupByDefault=FALSE). In grouped cases, the values of cex, col,
and pch are passed to rep() to achieve the same length as the number of
cycles in x. This can be useful in distinguishing between cycles.
an integer controlling how much information is to be printed
during operation. Use 0 for silent work, 1 for some information and 2 for
more information. Note that plot,argoFloats-method() reduces its debug
value by 1 before passing to plotArgoTS().
extra arguments provided to oce::plotTS().
Argo Data Management. “Argo User’s Manual.” Ifremer, July 5, 2022. https://doi.org/10.13155/29825.