Apply QC flags to Argo data

argo_qc_censor_if_not(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_censor_if(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_keep_if_all(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_keep_if_any(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_discard_if_all(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_discard_if_any(
  tbl,
  cols,
  qc_flag,
  qc_cols = argo_qc_cols(tbl, {     {         cols     } })
)

argo_qc_cols(tbl, cols)

Arguments

tbl: A data frame containing _qc or _QC columns.
cols: Columns in tbl, specified using dplyr::select() syntax.
qc_flag: One or more quality control flags. See argo_reference_qc_flag for long-form descriptions of integer qc_flag values.
qc_cols: A vector of columns that contain the quality control flag values found in columns.

Value

A modified tbl.

Examples

library(dplyr, warn.conflicts = FALSE)

with_argo_example_cache({
  argo_prof_levels("dac/csio/2902746/profiles/BR2902746_001.nc") %>%
    argo_qc_censor_if_not(doxy, qc_flag = c(1, 2, 8))
})
#> Extracting from 1 file
#> # A tibble: 101 × 15
#>    file          n_levels n_prof  pres c1phase_doxy c1phase_doxy_qc c2phase_doxy
#>    <chr>            <int>  <int> <dbl>        <dbl> <chr>                  <dbl>
#>  1 csio/2902746…        1      1 0.200         35.3 0                       5.62
#>  2 csio/2902746…        2      1 0.900         35.4 0                       5.61
#>  3 csio/2902746…        3      1 1.90          35.5 0                       5.60
#>  4 csio/2902746…        4      1 2.90          35.6 0                       5.60
#>  5 csio/2902746…        5      1 4             35.6 0                       5.59
#>  6 csio/2902746…        6      1 5             35.6 0                       5.59
#>  7 csio/2902746…        7      1 6             35.6 0                       5.59
#>  8 csio/2902746…        8      1 7.10          35.6 0                       5.58
#>  9 csio/2902746…        9      1 8.20          35.6 0                       5.58
#> 10 csio/2902746…       10      1 9.30          35.6 0                       5.58
#> # … with 91 more rows, and 8 more variables: c2phase_doxy_qc <chr>,
#> #   temp_doxy <dbl>, temp_doxy_qc <chr>, doxy <dbl>, doxy_qc <chr>,
#> #   doxy_adjusted <dbl>, doxy_adjusted_qc <chr>, doxy_adjusted_error <dbl>